Publications:

Gao J, Agrawal GK, Thelen JJ, Xu D (2008) P3DB: A plant protein phosphorylation database. Nucl. Acids Res. In press

Agrawal GK, Hajduch M, Graham, K, Thelen JJ (2008) In-depth investigation of soybean seed-filling proteome and comparison with a parallel study of rapeseed. Plant Physiol. 48:504-518

Jain R, Katavic V, Agrawal GK, Guzov VM, Thelen JJ (2008) Purification and proteomic characterization of plastids from Brassica napus developing embryos. Proteomics. 8:3397-3405

Miernyk JA, Thelen JJ (2008) Biochemical approaches for discovering protein-protein interactions. Plant J. 53:597–609

Thelen JJ, Peck SC (2007) Quantitative proteomics in plants: choices in abundance. Plant Cell. 19:3339–46

Hajduch M, Casteel JE, Tang S, Hearne LB, Knapp S, Thelen JJ (2007) Proteomic analysis of near isogenic sunflower varieties differing in seed oil traits. J. Proteome Res. 6:3232–41

Mooney BP, Miernyk JA, Greenlief CM, Thelen JJ (2006) Using quantitative proteomics of Arabidopsis roots and leaves to predict metabolic activity. Physiol. Plant. 128:237-250

Kojima M, Casteel J, Miernyk JA, Thelen JJ (2006) The effects of down-regulating expression of Arabidopsis thaliana membrane-associated acyl-CoA binding protein 2 on acyl-lipid composition. Plant Science. 172:36-44

Agrawal GK, Thelen JJ. Large-scale identification and quantification of phosphoproteins during seed filling in oilseed rape. Molecular and Cellular Proteomics 5: 2044-2059

Katavic V, Agrawal GK, Hajduch M, Harris SL, Thelen JJ. (2006) Protein and lipid compositional analysis of oil bodies from two Brassica napus cultivars. Proteomics In press

Hajduch M, Casteel JE, Hurrelmeyer KE, Song Z, Agrawal GK, Thelen JJ. (2006) Proteomic analysis of seed filling in Brassica napus: Developmental characterization of metabolic isozymes using high-resolution two-dimensional gel electrophoresis. Plant Physiol 141(1):32-46.

Agrawal GK, Thelen JJ (2005) Development of a simplified, economical polyacrylamide gel staining protocol for phosphoproteins. Proteomics 5(18):4684-8

Hajduch M, Ganapathy A, Stein JW, Thelen JJ (2005) A Systematic Proteomic Study Of Seed-Filling In Soybean: Establishment Of High-Resolution Two-Dimensional Reference Maps, Expression Profiles, and an Interactive Proteome Database. Plant Physiol 137 (4):1397-419

Wan J, Torres M, Ganapathy A, Thelen JJ, DaGue BB, Mooney B, Xu D, Stacey G. (2005) Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum. Mol. Plant Microbe Interact. 18:458-467

Phinney B, Thelen JJ (2005) Proteomic characterization of a Triton X-100 insoluble fraction from chloroplasts defines a novel group of proteins associated with macromolecular structures. J. Proteome Res. 4:497-506 Supplementary information

Mooney BP, Thelen JJ (2004) High-throughput peptide mass fingerprinting of soybean
seed proteins: automated workflow and utility of Unigene expressed sequence tag databases for protein identification. Phytochemistry 65:1733-44

Ganapathy A, Wan X-F, Wan J, Thelen JJ, Emerich DW, Stacey G, Xu D (2004) Statistical assessment for mass-spec protein identification using peptide fingerprinting approach. Conf Proc IEEE Eng Med Biol Soc. 4:3051-3054